LDMS 11.0 for the Web - User Manual

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  • Getting started
    • About Frontier Science
    • About LDMS
    • Migrating from Windows to web versions
    • System requirements
    • Signing in to LDMS
    • Acknowledgement of training
    • Changing users
    • Saving changes when automatically signed out
    • Downloading files
    • The LDMS user interface
    • Applying filters to a page
      • Specimen Filters Code Searching
    • Deleting Items
    • Using a List of Identifiers to Select Specimens
    • Challenge codes
  • Specimen management
    • Terms used in LDMS
    • Using the Specimen Management page
    • Entering specimen information (Overview)
    • Participants
      • Participant identifiers
      • Adding participants using the Specimen Management page
      • Adding participants using Quick Add
      • Modifying a participant
    • Enrollments
      • Adding enrollments using the Specimen Management page
      • Modifying enrollments
    • Visits
      • Visit identifiers
      • Adding a visit to an enrollment
      • Modifying visits
    • Primary specimens
      • Specimen identifiers
      • Specimen identifiers in LDMS for Windows
      • Adding a primary specimen to a visit
      • Co-enrolling a primary specimen
      • Modifying a primary specimen
    • Aliquot specimens
      • Adding aliquots to a primary specimen
      • Entering cryopreservation information
      • Modifying aliquot specimens
      • Creating Subaliquots
    • Delete a specimen
    • Removing specimens from storage
    • Quick add
      • Adding specimens using Quick Add
      • Adding participants using Quick Add
      • Adding enrollments using Quick Add
      • TBD in quick add templates
      • Quick add templates
        • Creating quick add templates
        • Modifying or deleting a quick add template
    • Differences between primaries and aliquots
    • Specimen availability
    • Specimen record details
    • Specimen conditions
      • Destroying a specimen
      • Procedural conditions
      • Specimen container conditions
      • Temperature conditions
      • Shipping conditions
      • Qualitative conditions
      • Quantitative conditions
      • Other conditions
    • Test assignment
      • Assigning tests to a specimen
      • Indicating that a test will not be performed
      • Deleting a test assignment
  • Storage
    • Navigation on the Storage page
      • The storage tree
      • Storage items
      • Icons and their meaning
    • Assigning storage locations
      • Adding a new storage unit
      • Adding a new level in a storage unit
      • Adding a container to a level
      • Assigning a storage location to specimens
      • Generating a printable list of what is in storage
      • Container report
    • Storage templates
      • Creating storage item templates
      • Modifying and removing storage templates
    • Moving items in storage
      • Moving Items in Storage - Filter Search
      • Consolidating storage containers
      • Listing specimens that moved in storage
    • Removing items from storage
    • Modifying the condition of stored specimens
    • Storage Action Report
  • Shipping
    • LDMS shipping file compatibility
    • Shipments are data transfer
    • Shipment numbers
    • New shipments
      • Creating new shipments
      • Sending a pending shipment
      • Generating a shipping manifest
    • Shipment Tracking Information
    • Supported shipping file formats
      • CSV shipping files
      • Cross-LIMS shipping files
      • SeraCare shipping files.
    • Shipping container report
    • Shipment storage report
    • Receiving shipments
      • Shipping and projects
      • Import as is
      • Handling non-LDMS shipping files
    • Shipment QA/QC
      • Performing QA/QC
    • Shipment history
      • Removing a received shipment
      • Un-sending shipments
      • Re-downloading the shipping file of a sent shipment
      • Bulk Updating Condition Code and Comments of Shipments
      • Shipment Evaluations
        • Creating a New Shipment Evaluation
        • Editing an Existing Shipment Evaluation
  • Reports
    • Custom Report Builder
      • Creating a custom report
      • Running a saved report
      • Modifying or deleting a saved report
      • Example custom report
    • Generating a report
    • Filter Reports Using a List of Specimens
    • Available report formats
    • Administrative reports
      • Anonymous Patients Map
      • Transaction Log Report
      • User Event Report
      • User permissions report
    • Barcode Reports
      • 1D Barcodes Report
      • 2D Barcodes Report
    • Exportable reports
      • Abbott SARS-COV-2 Quant Export Report
      • Abbott SARS-COV-2 Quant Export Report with Comments
      • Abbott SARS-COV-2 Quant Export Report with Sample Location
      • Aliquot count by primary report
      • Aliquot Inventory Report
      • CFAR export report
      • CFAR storage report
      • Database dump report
      • Database dump report 2
      • Exportable Abbott Assay Report
      • Laboratory 081 billing report
      • Laboratory 81 CNICS by date report
      • Laboratory 081 CNICS general report
      • Laboratory 188 storage report
      • Lab 40 LabKey report
      • Laboratory 48 billing report
      • Lab 485 aliquot report
      • Lab 485 specimen count report
      • Lab 485 specimen count with volume report
      • Primary specimen database dump report
      • Sample counts for specified project report
      • Specimen export report
      • Storage export report
      • Westat PK Export Report
    • Miscellaneous reports
      • Clinic contact report
      • LDMS abbreviated codes report
      • LDMS assay censor codes report
      • LDMS primary, additive, derivative, sub additive/derivative codes report
    • MWCCS
      • MWCCS Processing Report
    • Participant reports
      • Participant identifiers report
    • PK reports
      • Pharmacology Drug Count
      • Pharmacology Drug List
      • Pharmacology Proficiency Results
      • PK Drug Limits By Run
      • PK Participant Report
      • PK Summary Report
      • PK Summary with Assay Name
      • PK Summary with Assay Name (exportable)
    • Quick Add Templates
      • Quick Add Template List Report
    • RPID Reports
      • Random PID Report
      • RPID Specimen Request Report
    • Shipping reports
      • Daily imported specimen log report
      • Detailed imported specimen report
      • Imported specimen report - summary
      • Lab 263 Summary Detail of Shipped Specimens
      • Shipped specimen report - detail report
      • Shipped specimen report - summary report
      • Shipping laboratory contact report
      • Specimens Marked for Shipping
    • Specimen reports
      • Cell yield QA/QC summary report
      • Lab 263 Processing Report
      • Lab 263 Summary of Specimens
      • Primary specimens received report
      • Specimen count report
      • Specimen log report
      • Specimen processing report
      • Specimens for a given project report
      • Specimens for a given project 2
      • Time to freeze QA/QC summary report
      • Time to process QA/QC summary report
    • Storage reports
      • Specimens in storage per PID report
      • Specimens not in storage report
      • Specimens remaining in storage report
      • Storage container location report
      • Storage count report by freezer
      • Storage detail report
    • Test Result Reports
      • Abbott Realtime HIV1 Assay Report
      • Abbott Realtime HIV1 Patient Report
      • Abbott Repeat and Censored Run/Samples
      • Abbott SARS-COV-2 Quant Assay Report
      • Abbott SARS-COV-2 Quant Patient Report
      • IQA Cryopreservation Patient Report
      • TaqMan HCV Repeat and Censored Run/Samples
      • TaqMan HIV-1 Repeat and Censored Run Samples
      • TaqMan Realtime HCV Assay Report
      • TaqMan Realtime HCV Patient Report
      • TaqMan Realtime HIV-1 Assay Report
      • TaqMan Realtime HIV-1 Patient Report
      • Taqman Realtime Qual Assay Report
      • TaqMan Realtime Qual Patient Report
    • WIHS
      • Processing Log - Lab 263
  • Labels
    • Label formats
      • Barcodes
      • Label sizes
      • How to use a barcode reader with LDMS
    • Printing labels anywhere
    • Support for Labelscape-generated Barcodes
    • Generating labels
    • Defining new label formats
    • Customizing label formats
    • Setting the default label format for a project
  • Test Results
    • Test Results
      • Test Supported in LDMS
      • Running an assay means reading data
      • Test Results page
      • Locating assay runs
      • Censor Codes
      • Run Statuses
      • Creating New Test Result Runs
        • Adding Cryopreservation Test Results
      • Assigning Results to Blinded Controls (Pellets)
      • Reviewing a Run
      • Test History
      • Deleting assay runs
      • Restoring deleted runs
      • Test result reports
    • Entering PK Test Results
      • Completing PK Test Results
      • Reviewing a PK Test Run
    • PK Control Lots
      • Adding a New Lot
      • Editing or Deleting a Lot
    • PK Control Charting
      • Generating a Report
    • PK Templates
      • Adding a New Template
      • Updating an Existing Template
  • Data Submission
    • Adding Submissions
    • Editing Submissions
    • Data Submission Filters
  • Printers
    • Setting up the Brady IP300 printer
    • Setting up the Brady® MVP 300 printer
    • Setting up the LabXpert printer
    • Setting up the Zebra® GX 430t printer
    • Setting up the Brady BBP11-34L printer
    • Setting up the Brady® BBP33 printer
    • Setting up the Brady BMP53 printer
    • Setting up the Brady BP-PR 300 printer
    • Setting up the Zebra ZD620 Printer
    • Setting up other printers
  • Preset projects
    • ACTIV
    • ACTG/IMPAACT
    • AERAS
    • AIEDRP
    • AIS
    • AMC
    • ATN
    • BHP
    • BM
    • Botswana MOH
    • CEMALB
    • CHAVI
    • CIPRA-HT
    • CIPRA-ZA
    • CIPRA
    • CONTROL
    • CoVPN
    • CPCRA
    • CPQA
    • CP-CTNET
    • FACTS
    • HN
    • HPTN
    • IDCRC
    • IPREX
    • IQA
    • IRC
    • KENPHIA2
    • MACS
    • MATRIX
    • MAVRC
    • MOSAIC
    • mStudy
    • MTCT
    • MTN
    • MWCCS
    • NICHD-Westat
    • PHACS
    • PHIA
    • REPRIEVE
    • SHIMS
    • SNRP
    • TIES
    • VQA
    • VTN
    • WHIN
    • WIHS
    • WITS
    • WITSRepos
    • ZEBS
    • ZIP
  • Administration
    • Projects
      • Local projects
        • Creating a new project
        • Modifying and removing a project
      • Government projects
    • Adding a Reagent
      • Adding Reagent Information
      • Linking Reagent to Sample in Specimen Management
      • Linking Reagent to Sample in Quick Add
      • Linking Additive to Reagent Lot
      • Reagent Lot Sample Details Report
    • Specimen Anonymization
    • Lab Settings
    • User Settings
    • User management
    • Changing your password
      • Password requirements
    • Dropdown Customization
    • RPID Requests
      • Adding a New RPID Request
      • Editing an RPID Request
    • Clear Filters
  • Online Resources
  • Codes, units, and abbreviations
    • Specimen type codes
      • Primary codes
      • Additive codes
      • Derivative codes
      • Sub additive/derivative codes
    • Condition codes
    • Unit codes
      • Measurement codes
      • Time unit codes
      • Visit codes
    • Assay Codes
      • Reasons for not running an assay censor codes
      • Immunology assay codes
        • Reasons why results were not obtained for immunology assays
      • Virology assay codes
        • Virology user censor codes
        • Roche COBAS Ampliprep/COBAS TaqMan HIV-1 assay censor codes
        • COBAS TaqMan HCV assay censor codes
        • COBAS TaqMan HIV-1 Qual assay censor codes
        • Abbott Realtime HIV-1 and Abbott SARS-COV-2 Quant assay censor codes
      • Pharmacology assay codes
        • Pharmacology analyte codes
        • Pharmacology system censor codes
        • Pharmacology assay user censor codes
        • Pharmacology concentration units